Updated list here
Bentley University
DePaul University
George Mason University
PhD in Computational Sciences and Informatics
Indiana University-Purdue University Indianapolis School of Informatics
North Carolina State
Northwestern University
Master of Science in Analytics
Master of Science in Predictive Analytics (Online Program)
Syracuse University School of Information Studies
Graduate Certificate of Advanced Studies in Data Science
University of San Francisco
Note: UC Berkeley is currently offering an Introduction to Data Science course
Update:
Stevens Institute’s Wesley J. Howe School of Technology Management
Master of Science in Business Intelligence and Analytics
Update 2: Harvard University will launch a master’s program in computational science and engineering (CSE) in September 2013, “with the aim of training leaders for a future in which large-scale computation and advanced mathematical modeling will propel innovation in fields from psychology to photonics… The one-year, master of science (S.M.) program will provide rigorous training in the mathematical and computing foundations of CSE, emphasizing the application of fundamental knowledge across the frontiers of natural and social sciences, the humanities, and engineering.”
Update 3: The School of Computing at the University of Dundee has announced its intention to run a new MSc in Data Science, starting in January 2013.